The pairwise homoplasy index
Webb15 sep. 2024 · A more extreme problem of interpretation of pairwise homoplasies arises in some methods for analyzing electrophoretic data. Suppose that each of three terminal … Webb9 okt. 2024 · A pairwise homoplasy index (PHI or Φw) below 0.05 provide evidence for the presence of significant recombination within a dataset. According to the GCPSR analysis, our dataset showed PHI of 1.0, indicating no significant genetic recombination between C. vitis and its sister taxa, C. diplodiella and C. diplodiopsis ( Fig. 3 ).
The pairwise homoplasy index
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Webb3 sep. 2013 · Results of the Pairwise Homoplasy Index (PHI) test (Table J in Supplementary Tables S1) showed that no recombination occurred within each locus across all Asian populations, however two recombination events were observed among concatenated sequences of isolates from East and South/Southeast Asia. Webb22 okt. 2014 · START was also used to determine that the GC content in the MLST genes was comparable to that of the whole-genome GC content. To detect recombination within the Y. enterocolitica MLST data, SplitsTree 4.2 was used to compute the pairwise homoplasy index (PHI).
Webb11 mars 2014 · The dataset was evaluated for the presence of recombination using the pairwise homoplasy index (PHI) test (Bruen et al. 2006) implemented by SplitsTree, where the minimum number of homoplasies required to describe the genealogical history between sites was calculated. Webb5 feb. 2016 · Using the alignment of the concatenated genes of each of the five clusters in the second data set as input, we also ran the Pairwise Homoplasy Index (PHI) test for recombination implemented in ...
Webb15 dec. 2024 · The present study follows a recently revised classification [ 1] combined with molecular data, morphology, and pairwise homoplasy index (PHI) test results and introduces seven novel taxa and two newly recorded taxa within the family Diaporthales found in Guizhou, China. 2. Materials and Methods 2.1. Sample Collection and Fungal …
Webb4 apr. 2024 · Pairwise values of both indices were low or moderately high, ranging from 0 to 0.163 (F ST). Many comparisons were statistically significant even after correction for multiple testing, mainly those involving Lev and Nor. Low and not significant values for comparisons, especially involving Sardinian samples, highlighted the lack of significant …
Webb1 juli 2024 · Moreover, the pairwise homoplasy index test and the comparison of morphological and ecological characters, have strengthened the fact that reproductive isolation and geographical or host plant barriers to gene flow are absent. This study has also demonstrated that the identification of species in Diaporthe might . Declaration of … china business law journal awards 2021Webb23 juni 2015 · The pairwise homoplasy index (PHI) and split decomposition tree obtained with Splitstree four software were also indicators of recombination events. Phylogenetic analysis. The e-BURST V3 software was used to analyze the relation among STs and to divide them into groups clonal complexes (CC). grafo-thermWebb14 feb. 2024 · Morphological studies and multilocus phylogenetic analyses with the concatenated sequences of the internal transcribed spacer, glyceraldehyde-3-phosphate dehydrogenase, chitin synthase, actin, beta-tubulin, calmodulin, and the intergenic region between Apn2 and Mat1-2-1, as well as a pairwise homoplasy index, test placed the … grafo-therm anti-condensationWebbMorphological studies and multi-locus phylogenetic analyses with the concatenated sequences of internal transcribed spacer (ITS), glyceraldehyde-3-phosphate dehydrogenase (GAPDH), chitin synthase (CHS-1), actin (ACT), beta-tubulin (TUB2), calmodulin (CAL), and the intergenic region between Apn2 and Mat1-2-1 (ApMat) as well … china business news 第一财经Webb20 jan. 2016 · They have a homoplasy degree of 0 in all figures. Additional tests for recombination were also performed, namely the estimation of the pairwise homoplasy index (Bruen, Philippe, and Bryant 2006) and the triplet test implemented in 3Seq (Boni, Posada, and Feldman 2007). 2.4 LD decay china business newswireWebbPathogenicity tests and the pairwise homoplasy index test suggest that C. jiangxiense and C. kahawae subsp. kahawae are two independent species. This study represents the first report of C. alienum and C. cliviae occurring on Camellia sinensis. grafo-therm anti-condensation coatingWebb1 juni 2024 · Recombination within FOSC was tested using the pairwise homoplasy index and divergence ages were estimated by molecular dating. We called SNPs from assembled genomes using a k-mer approach and tested for significant linkage disequilibrium as an indication of PCE. grafotherm anti condensation treatment